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    LOC9307459 cellulose synthase A catalytic subunit 5 [UDP-forming] [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9307459, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9307459
    Gene description
    cellulose synthase A catalytic subunit 5 [UDP-forming]
    Locus tag
    ARALYDRAFT_908936
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9307459 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (3894872..3900310)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene probable mediator of RNA polymerase II transcription subunit 26c Neighboring gene THO complex subunit 1 Neighboring gene uncharacterized LOC9307460 Neighboring gene RNA-binding protein 39

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase A catalytic subunit 5 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      3894872..3900310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002871343.2 → XP_002871389.1  cellulose synthase A catalytic subunit 5 [UDP-forming]

      See identical proteins and their annotated locations for XP_002871389.1

      UniProtKB/TrEMBL
      D7M282, D7MSJ2
      Conserved Domains (3) summary
      PLN02436
      Location:1 → 1069
      PLN02436; cellulose synthase A
      pfam14569
      Location:34 → 97
      zf-UDP; Zinc-binding RING-finger
      cl11394
      Location:512 → 820
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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