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    LOC9307240 uncharacterized LOC9307240 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9307240, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9307240
    Gene description
    uncharacterized LOC9307240
    Locus tag
    ARALYDRAFT_487352
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9307240 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302550.1 (2036733..2044216)

    NW_003302550.1Genomic Context describing neighboring genes Neighboring gene trihelix transcription factor ASIL2 Neighboring gene anaphase-promoting complex subunit 1 Neighboring gene temperature-sensitive sn-2 acyl-lipid omega-3 desaturase (ferredoxin), chloroplastic Neighboring gene N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic Neighboring gene probable 2-oxoglutarate-dependent dioxygenase At5g05600

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302550 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables myosin II binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9307240
    Names
    transducin family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302550.1 Reference v.1.0 Primary Assembly

      Range
      2036733..2044216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021020253.1 → XP_020875912.1  uncharacterized protein LOC9307240

      UniProtKB/TrEMBL
      D7LYY6
      Conserved Domains (3) summary
      COG2319
      Location:24 → 322
      WD40; WD40 repeat [General function prediction only]
      cd15873
      Location:1029 → 1086
      R-SNARE_STXBP5_6; SNARE domain of STXBP5, STXBP6 and related proteins
      sd00039
      Location:83 → 109
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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