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    CBG16139 Protein CBG16139 [ Caenorhabditis briggsae ]

    Gene ID: 8585470, updated on 6-Jun-2024

    Summary

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    Gene symbol
    CBG16139
    Gene description
    Protein CBG16139
    Locus tag
    CBG_16139
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See CBG16139 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Sequence:
    Chromosome: X; NC_013491.2 (2056884..2058855)

    Chromosome X - NC_013491.2Genomic Context describing neighboring genes Neighboring gene Protein CBG16141 Neighboring gene Protein CBG27443 Neighboring gene Protein CBR-TBB-4 Neighboring gene Protein CBR-MEMB-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013491.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NAD+ binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBG16139
    XP_002643477.1
    • contains similarity to Pfam domains PF00725 (3-hydroxyacyl-CoA dehydrogenase, C-terminal domain), PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF03446 (NAD binding domain of 6-phosphogluconate dehydrogenase), PF03721 (UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain) contains similarity to Interpro domains IPR006115 (6-phosphogluconate dehydrogenase, NADP-binding), IPR001732 (UDP-glucose/GDP-mannose dehydrogenase, N-terminal), IPR006108 (3-hydroxyacyl-CoA dehydrogenase, C-terminal), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding), IPR006180 (3-hydroxyacyl-CoA dehydrogenase, conserved site);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013491.2 Reference assembly

      Range
      2056884..2058855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002643431.1 → XP_002643477.1  Protein CBG16139 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002643477.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9FAK3, A8XP12
      Conserved Domains (3) summary
      COG1250
      Location:20 → 308
      FadB; 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
      pfam00725
      Location:211 → 308
      3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
      pfam02737
      Location:24 → 209
      3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    Nucleotide Protein
    Heading Accession and Version

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