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    Pre-rRNA-processing protein TSR2, conserved region [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832869, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pre-rRNA-processing protein TSR2, conserved region
    Primary source
    TAIR:AT5G27990
    Locus tag
    AT5G27990
    See related
    Araport:AT5G27990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15F15.60; F15F15_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (10016662..10018526)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ARM repeat superfamily protein Neighboring gene Seed maturation protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001344051.1
    NM_122682.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Pre-rRNA-processing protein TSR2, conserved region
    NP_001318666.1
    • Pre-rRNA-processing protein TSR2, conserved region; CONTAINS InterPro DOMAIN/s: Pre-rRNA-processing protein TSR2, conserved region (InterPro:IPR019398); BEST Arabidopsis thaliana protein match is: Pre-rRNA-processing protein TSR2, conserved region (TAIR:AT3G22510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      10016662..10018526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344051.1 → NP_001318666.1  Pre-rRNA-processing protein TSR2, conserved region [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHJ3, A0A5S9YA62, Q8L9R4
      Conserved Domains (1) summary
      pfam10273
      Location:15 → 95
      WGG; Pre-rRNA-processing protein TSR2

    2. NM_122682.4 → NP_198151.1  Pre-rRNA-processing protein TSR2, conserved region [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198151.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHJ3, A0A5S9YA62, Q8L9R4
      Conserved Domains (1) summary
      pfam10273
      Location:15 → 95
      WGG; Pre-rRNA-processing protein TSR2
    Nucleotide Protein
    Heading Accession and Version

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