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    D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832729, updated on 18-Sep-2024

    Summary

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    Official Full Name
    D111/G-patch domain-containing protein
    Primary source
    TAIR:AT5G26610
    Locus tag
    AT5G26610
    See related
    Araport:AT5G26610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (9375089..9377168)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational Regulation of Metabolic Dynamics during Effector-Triggered Immunity. Yoo H, et al. Mol Plant, 2020 Jan 6. PMID 31568832, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203474.2
    NM_180554.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    D111/G-patch domain-containing protein
    NP_001190403.1
    • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1).
    NP_850884.1
    • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink).
    NP_850885.1
    • D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), D111/G-patch (InterPro:IPR000467), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: suppressor of abi3-5 (TAIR:AT3G54230.1); Has 2550 Blast hits to 2366 proteins in 262 species: Archae - 4; Bacteria - 51; Metazoa - 1383; Fungi - 291; Plants - 280; Viruses - 14; Other Eukaryotes - 527 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9375089..9377168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180553.3 → NP_850884.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850884.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
      Conserved Domains (2) summary
      smart00443
      Location:64 → 108
      G_patch; glycine rich nucleic binding domain
      pfam12171
      Location:161 → 188
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

    2. NM_180554.2 → NP_850885.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850885.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
      Conserved Domains (2) summary
      smart00443
      Location:64 → 108
      G_patch; glycine rich nucleic binding domain
      pfam12171
      Location:161 → 188
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding

    3. NM_001203474.2 → NP_001190403.1  D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190403.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKJ5, A0A5S9Y7F8, A0A654G4B6, Q147M4
      Conserved Domains (2) summary
      smart00443
      Location:64 → 108
      G_patch; glycine rich nucleic binding domain
      pfam12171
      Location:161 → 188
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
    Nucleotide Protein
    Heading Accession and Version

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