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    HMG-box (high mobility group) DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832406, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HMG-box (high mobility group) DNA-binding family protein
    Primary source
    TAIR:AT5G23405
    Locus tag
    AT5G23405
    See related
    Araport:AT5G23405
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (7882672..7884662, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cox19-like CHCH family protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins. Grasser M, et al. J Mol Biol, 2006 May 5. PMID 16563436
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At2g34450 protein is a nuclear protein, whereas the At5g23405 protein is found mainly in the cytoplasm
      Title: The Arabidopsis genome encodes structurally and functionally diverse HMGB-type proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001343801.1
    NM_122247.2
    NM_180732.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HMG-box (high mobility group) DNA-binding family protein
    NP_001318627.1
    • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high-mobility group box 6 (TAIR:AT5G23420.1); Has 679 Blast hits to 656 proteins in 130 species: Archae - 0; Bacteria - 10; Metazoa - 256; Fungi - 44; Plants - 248; Viruses - 7; Other Eukaryotes - 114 (source: NCBI BLink).
    NP_851063.1
    • HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high-mobility group box 6 (TAIR:AT5G23420.1); Has 632 Blast hits to 609 proteins in 129 species: Archae - 0; Bacteria - 10; Metazoa - 212; Fungi - 44; Plants - 246; Viruses - 7; Other Eukaryotes - 113 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7882672..7884662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180732.2 → NP_851063.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851063.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E975, Q941D1
      Conserved Domains (1) summary
      cd01390
      Location:67 → 117
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    2. NM_001343801.1 → NP_001318627.1  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Q8
      Conserved Domains (1) summary
      cd01390
      Location:66 → 116
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

    3. NM_122247.2 → NP_568430.2  HMG-box (high mobility group) DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568430.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Q8
      Conserved Domains (1) summary
      cd01390
      Location:66 → 116
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q941D1.1

    Gene LinkOut

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