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    PRLI-interacting factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832112, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PRLI-interacting factor
    Primary source
    TAIR:AT5G19900
    Locus tag
    AT5G19900
    See related
    Araport:AT5G19900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28I16.50; F28I16_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (6727342..6730407, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene SOH1 family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343627.1
    NM_001343629.1
    NM_001343630.1
    NM_121997.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PRLI-interacting factor
    NP_001318605.1
    • PRLI-interacting factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6727342..6730407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343628.1 → NP_001331939.1  PRLI-interacting factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
      Conserved Domains (2) summary
      TIGR01628
      Location:14 → 162
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam04554
      Location:10 → 67
      Extensin_2; Extensin-like region

    2. NM_001343627.1 → NP_001318605.1  PRLI-interacting factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
      Conserved Domains (2) summary
      TIGR01628
      Location:14 → 162
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam04554
      Location:10 → 67
      Extensin_2; Extensin-like region

    3. NM_121997.3 → NP_197490.1  PRLI-interacting factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197490.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
      Conserved Domains (2) summary
      TIGR01628
      Location:14 → 162
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam04554
      Location:10 → 67
      Extensin_2; Extensin-like region

    4. NM_001343629.1 → NP_001331938.1  PRLI-interacting factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
      Conserved Domains (2) summary
      TIGR01628
      Location:14 → 162
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam04554
      Location:10 → 67
      Extensin_2; Extensin-like region

    5. NM_001343630.1 → NP_001331937.1  PRLI-interacting factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
      Conserved Domains (2) summary
      TIGR01628
      Location:14 → 162
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam04554
      Location:10 → 67
      Extensin_2; Extensin-like region
    Nucleotide Protein
    Heading Accession and Version

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