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    KLTH0H02134g KLTH0H02134p [ Lachancea thermotolerans CBS 6340 ]

    Gene ID: 8294285, updated on 21-Dec-2023

    Summary

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    Gene symbol
    KLTH0H02134g
    Gene description
    KLTH0H02134p
    Locus tag
    KLTH0H02134g
    Gene type
    protein coding
    RNA name
    KLTH0H02134p
    RefSeq status
    PROVISIONAL
    Organism
    Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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    Genomic context

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    See KLTH0H02134g in Genome Data Viewer
    Location:
    chromosome: H
    Exon count:
    1
    Sequence:
    Chromosome: H; NC_013084.1 (191540..195439)

    Chromosome H - NC_013084.1Genomic Context describing neighboring genes Neighboring gene KLTH0H02090p Neighboring gene KLTH0H02112p Neighboring gene KLTH0H02156p Neighboring gene KLTH0H02178p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013084.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    KLTH0H02134p
    XP_002555972.1
    • similar to uniprot|P38968 Saccharomyces cerevisiae YDL195W SEC31 involved in protein transport from endoplasmic reticulum to Golgi Component (p150) of COPII coat of secretory pathway vesicles

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013084.1 Reference assembly

      Range
      191540..195439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002555926.1 → XP_002555972.1  KLTH0H02134p [Lachancea thermotolerans CBS 6340]

      See identical proteins and their annotated locations for XP_002555972.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C5E249
      Conserved Domains (6) summary
      COG2319
      Location:29 → 426
      WD40; WD40 repeat [General function prediction only]
      pfam07304
      Location:1157 → 1298
      SRA1; Steroid receptor RNA activator (SRA1)
      pfam11549
      Location:931 → 977
      Sec31; Protein transport protein SEC31
      sd00039
      Location:12 → 60
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:14 → 321
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl23807
      Location:1049 → 1091
      WWbp; WW-domain ligand protein
    Nucleotide Protein
    Heading Accession and Version

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