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    AT3G49420 Got1/Sft2-like vescicle transport protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824104, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G49420
    Gene description
    Got1/Sft2-like vescicle transport protein family
    Primary source
    Araport:AT3G49420
    Locus tag
    AT3G49420
    See related
    TAIR:AT3G49420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G49420 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (18329330..18331431)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CTC-interacting domain 10 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Transcription factor IIIC, subunit 5 Neighboring gene SER/ARG-rich protein 34A Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001339415.1
    NM_001339416.1
    NM_114802.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Got1/Sft2-like vescicle transport protein family
    NP_190511.1
    • Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G01430.2); Has 450 Blast hits to 450 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 112; Plants - 96; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18329330..18331431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114802.3 → NP_190511.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190511.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEX8, A0A384KRW6, Q9CA07, Q9SCL4
      Conserved Domains (1) summary
      cl02130
      Location:6 → 123
      Got1; Got1/Sft2-like family

    2. NM_001339415.1 → NP_001327135.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEX8, A0A384KRW6, Q9CA07, Q9SCL4
      Conserved Domains (1) summary
      cl02130
      Location:6 → 123
      Got1; Got1/Sft2-like family

    3. NM_001339416.1 → NP_001327134.1  Got1/Sft2-like vescicle transport protein family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UEX8, A0A384KRW6, Q9CA07, Q9SCL4
      Conserved Domains (1) summary
      cl02130
      Location:6 → 123
      Got1; Got1/Sft2-like family
    Nucleotide Protein
    Heading Accession and Version

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