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    Phum_PHUM156970 Coatomer subunit beta', putative [ Pediculus humanus corporis (human body louse) ]

    Gene ID: 8236508, updated on 6-Jan-2024

    Summary

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    Gene symbol
    Phum_PHUM156970
    Gene description
    Coatomer subunit beta', putative
    Locus tag
    Phum_PHUM156970
    See related
    VectorBase:PHUM156970
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pediculus humanus corporis (strain: USDA, sub-species: corporis)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Psocodea; Phthiraptera; Anoplura; Pediculidae; Pediculus
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    Genomic context

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    See Phum_PHUM156970 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    16

    NW_002987116.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component, putative Neighboring gene thioredoxin-2, putative Neighboring gene uncharacterized protein Neighboring gene amino acid transporter, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002987116.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Coatomer subunit beta', putative
    XP_002424856.1
    • encoded by transcript Phum_PHUM156970-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002987116.1 Reference assembly

      Range
      467655..471881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002424811.1 → XP_002424856.1  Coatomer subunit beta', putative [Pediculus humanus corporis]

      See identical proteins and their annotated locations for XP_002424856.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0VFG2
      Conserved Domains (4) summary
      COG2319
      Location:3 → 421
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:22 → 304
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:328 → 772
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:72 → 104
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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