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    Phum_PHUM539800 F-box/WD-repeat protein, putative [ Pediculus humanus corporis (human body louse) ]

    Gene ID: 8235482, updated on 6-Jan-2024

    Summary

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    Gene symbol
    Phum_PHUM539800
    Gene description
    F-box/WD-repeat protein, putative
    Locus tag
    Phum_PHUM539800
    See related
    VectorBase:PHUM539800
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pediculus humanus corporis (strain: USDA, sub-species: corporis)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Psocodea; Phthiraptera; Anoplura; Pediculidae; Pediculus
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    Genomic context

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    See Phum_PHUM539800 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    6

    NW_002987859.1Genomic Context describing neighboring genes Neighboring gene Chondroitin sulfate synthase, putative Neighboring gene BTB/POZ domain-containing protein, putative Neighboring gene proton-coupled amino acid transporter, putative Neighboring gene proton-coupled amino acid transporter, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002987859.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/WD-repeat protein, putative
    XP_002431665.1
    • encoded by transcript Phum_PHUM539800-RA
      Gene spans sequencing gaps and may be missing exons.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002987859.1 Reference assembly

      Range
      1079615..1083445 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002431620.1 → XP_002431665.1  F-box/WD-repeat protein, putative [Pediculus humanus corporis]

      See identical proteins and their annotated locations for XP_002431665.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0VZX1
      Conserved Domains (4) summary
      COG2319
      Location:276 → 569
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:282 → 559
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam12937
      Location:189 → 235
      F-box-like; F-box-like
      sd00039
      Location:293 → 328
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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