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    AT3G21290 dentin sialophosphoprotein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821683, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT3G21290
    Gene description
    dentin sialophosphoprotein-like protein
    Primary source
    Araport:AT3G21290
    Locus tag
    AT3G21290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXL8.16
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    Genomic context

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    See AT3G21290 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (7482106..7488935)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene DOF zinc finger protein 2 Neighboring gene ubiquitin carboxyl-terminal hydrolase Neighboring gene Tudor/PWWP/MBT superfamily protein Neighboring gene RNA methyltransferase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity. Tomassi AH, et al. Plant Physiol, 2020 Sep. PMID 32636339, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338522.1
    NM_113024.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables miRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    dentin sialophosphoprotein-like protein
    NP_566681.1
    • dentin sialophosphoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Occludin/RNA polymerase II elongation factor, ELL domain (InterPro:IPR010844); Has 17175 Blast hits to 8691 proteins in 788 species: Archae - 88; Bacteria - 6651; Metazoa - 4182; Fungi - 1520; Plants - 456; Viruses - 109; Other Eukaryotes - 4169 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7482106..7488935
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113024.3 → NP_566681.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566681.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VB76, A0A384KH30, F4IXI9, Q94BS1
      Conserved Domains (1) summary
      pfam07303
      Location:1088 → 1187
      Occludin_ELL; Occludin homology domain

    2. NM_001338522.1 → NP_001326781.1  dentin sialophosphoprotein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQB8, Q94BS1
    Nucleotide Protein
    Heading Accession and Version

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