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    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820949, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    Primary source
    TAIR:AT3G02770
    Locus tag
    AT3G02770
    See related
    Araport:AT3G02770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13E7.29; F13E7_29
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (600849..602399, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene Class II aaRS and biotin synthetases superfamily protein Neighboring gene isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene Tyrosine phosphatase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111145.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxaloacetate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of RNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    NP_186926.1
    • Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT5G16450.2); Has 3340 Blast hits to 3340 proteins in 1050 species: Archae - 84; Bacteria - 2632; Metazoa - 2; Fungi - 51; Plants - 104; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      600849..602399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111145.4 → NP_186926.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186926.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8R9
      UniProtKB/TrEMBL
      A0A178VHZ8, A0A384L0L2, Q67Y35
      Conserved Domains (1) summary
      TIGR01935
      Location:6 → 160
      NOT-MenG; RraA famliy
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M8R9.1

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