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    PF3D7_1364300 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [ Plasmodium falciparum 3D7 ]

    Gene ID: 813888, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1364300
    Gene description
    pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
    Locus tag
    PF3D7_1364300
    See related
    PlasmoDB:PF3D7_1364300; VEuPathDB:PF3D7_1364300
    Gene type
    protein coding
    RNA name
    pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1364300 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Sequence:
    Chromosome: 13; NC_004331.3 (2579159..2582614, complement)

    Chromosome 13 - NC_004331.3Genomic Context describing neighboring genes Neighboring gene 6-cysteine protein Neighboring gene nucleoporin NUP205, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene exosome complex component RRP45, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004331.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plasmodium falciparum Prp16 homologue and its role in splicing. Singh PK, et al. Biochim Biophys Acta, 2012 Nov-Dec. PMID 22982196

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
    XP_002809102.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004331.3 Reference assembly

      Range
      2579159..2582614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002809056.2 → XP_002809102.2  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Plasmodium falciparum 3D7]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V258, A0A024W2L4, A0A0L1I549, A0A5K1K9B8, W7JHT9, W7KAB9
      Conserved Domains (1) summary
      COG1643
      Location:454 → 1138
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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