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    LOC8079630 lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [ Sorghum bicolor (sorghum) ]

    Gene ID: 8079630, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8079630
    Gene description
    lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial
    Locus tag
    SORBI_3003G148800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8079630 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (15620710..15625912, complement)

    Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene protein trichome birefringence-like 38 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 3-like Neighboring gene malignant T-cell-amplified sequence 1 homolog Neighboring gene bidirectional sugar transporter SWEET17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipoic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      15620710..15625912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002457709.2 → XP_002457754.1  lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial

      See identical proteins and their annotated locations for XP_002457754.1

      UniProtKB/TrEMBL
      A0A1W0VXD8, A0A921RBW5, C5XIU9
      Conserved Domains (1) summary
      PLN02528
      Location:108 → 523
      PLN02528; 2-oxoisovalerate dehydrogenase E2 component
    Nucleotide Protein
    Heading Accession and Version

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