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    LOC8067473 transcription factor UNE12 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8067473, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8067473
    Gene description
    transcription factor UNE12
    Locus tag
    SORBI_3009G187900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8067473 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (54028138..54030705)

    Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8080070 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.4 Neighboring gene NAD(P)H dehydrogenase (quinone) FQR1-like Neighboring gene receptor-like serine/threonine-protein kinase SD1-8 Neighboring gene uncharacterized LOC110430335

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor UNE12; uncharacterized protein LOC8067473

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      54028138..54030705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021447210.1 → XP_021302885.1  uncharacterized protein LOC8067473 isoform X1

      Conserved Domains (1) summary
      smart00353
      Location:235 → 280
      HLH; helix loop helix domain

    2. XM_021447209.1 → XP_021302884.1  uncharacterized protein LOC8067473 isoform X1

      Conserved Domains (1) summary
      smart00353
      Location:235 → 280
      HLH; helix loop helix domain

    3. XM_021447211.1 → XP_021302886.1  transcription factor UNE12 isoform X2

      UniProtKB/TrEMBL
      A0A921U5N1, C5Z0F8
      Conserved Domains (1) summary
      smart00353
      Location:235 → 280
      HLH; helix loop helix domain

    4. XM_002439982.2 → XP_002440027.1  transcription factor UNE12 isoform X2

      See identical proteins and their annotated locations for XP_002440027.1

      UniProtKB/TrEMBL
      A0A921U5N1, C5Z0F8
      Conserved Domains (1) summary
      smart00353
      Location:235 → 280
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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