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    LOC8060824 DNA damage-binding protein 2 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8060824, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8060824
    Gene description
    DNA damage-binding protein 2
    Locus tag
    SORBI_3003G077600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8060824 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (6628196..6632713)

    Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene probable zinc metalloprotease EGY2, chloroplastic Neighboring gene mucin-5AC Neighboring gene protein root UVB sensitive 5 Neighboring gene protein SGT1 homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to UV IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA damage-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      6628196..6632713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021457194.1 → XP_021312869.1  DNA damage-binding protein 2

      UniProtKB/TrEMBL
      A0A921RBM7, C5XQ48
      Conserved Domains (3) summary
      COG2319
      Location:190 → 518
      WD40; WD40 repeat [General function prediction only]
      COG5082
      Location:98 → 139
      AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
      sd00039
      Location:198 → 236
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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