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    LOC8059710 caffeic acid 3-O-methyltransferase [ Sorghum bicolor (sorghum) ]

    Gene ID: 8059710, updated on 25-Apr-2024

    Summary

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    Gene symbol
    LOC8059710
    Gene description
    caffeic acid 3-O-methyltransferase
    Locus tag
    SORBI_3004G351400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8059710 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (68006523..68010539)

    Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8059709 Neighboring gene uncharacterized LOC110435066 Neighboring gene uncharacterized LOC8059711 Neighboring gene uncharacterized LOC110434864

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeic acid 3-O-methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      68006523..68010539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002453029.2 → XP_002453074.1  caffeic acid 3-O-methyltransferase

      See identical proteins and their annotated locations for XP_002453074.1

      UniProtKB/TrEMBL
      A0A921R9M5, C5XWK7
      Conserved Domains (2) summary
      pfam08100
      Location:42 → 89
      Dimerization; Dimerization domain
      cl17173
      Location:142 → 362
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials