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    LOC8055813 transcription factor bHLH30 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8055813, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8055813
    Gene description
    transcription factor bHLH30
    Locus tag
    SORBI_3002G198500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8055813 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (58845229..58847885, complement)

    Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene 5'-3' exoribonuclease 2-like Neighboring gene uncharacterized LOC8055809 Neighboring gene transcription factor PCF5 Neighboring gene NAD(P)H-quinone oxidoreductase subunit L, chloroplastic Neighboring gene uncharacterized LOC110432345 Neighboring gene uncharacterized LOC8060235

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      58845229..58847885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002462320.2 → XP_002462365.1  transcription factor bHLH30

      See identical proteins and their annotated locations for XP_002462365.1

      UniProtKB/TrEMBL
      A0A921UUE9, C5XC82
      Conserved Domains (2) summary
      cd11455
      Location:109 → 171
      bHLH_AtAIG1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein AIG1 and similar proteins
      cl09141
      Location:217 → 260
      ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    Nucleotide Protein
    Heading Accession and Version

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