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    HCoSV-B_gp1 polyprotein [ Human cosavirus B ]

    Gene ID: 7986822, updated on 16-Aug-2018

    Summary

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    Gene symbol
    HCoSV-B_gp1
    Gene description
    polyprotein
    Locus tag
    HCoSV-B_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Human cosavirus B (strain: HCoSV-B1, isolate: 2263, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus
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    Genomic context

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    Sequence:
    NC_012801.1 (750..7124)

    NC_012801.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012801.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Kapoor A, et al. Proc Natl Acad Sci U S A, 2008 Dec 23. PMID 19033469, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    3C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012801.1 Reference assembly

      Range
      750..7124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002956075.1 polyprotein [Human cosavirus B]

      See identical proteins and their annotated locations for YP_002956075.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8XTQ3
      Conserved Domains (6) summary
      cd00205
      Location:404 → 565
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1489 → 1636
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1133 → 1234
      RNA_helicase; RNA helicase
      pfam08935
      Location:9 → 64
      VP4_2; Viral protein VP4 subunit
      cl02808
      Location:1674 → 2119
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:678 → 848
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    2. YP_002956108.1 VP4

    3. YP_002956109.1 VP2

      Conserved Domains (1) summary
      cd00205
      Location:59 → 263
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_002956110.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:65 → 226
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_002956111.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:134 → 279
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_002956112.1 2A

    7. YP_002956113.1 2B

    8. YP_002956114.1 3C

      Conserved Domains (1) summary
      pfam00910
      Location:116 → 217
      RNA_helicase; RNA helicase

    9. YP_002956115.1 3A

    10. YP_002956116.1 3B

    11. YP_002956117.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:30 → 177
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_002956118.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:12 → 457
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Protein Accession Links
    GenPept Link UniProtKB Link
    ACL15190.1

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