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    LOC778112 dof zinc finger protein DOF4.6 [ Glycine max (soybean) ]

    Gene ID: 778112, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC778112
    Gene description
    dof zinc finger protein DOF4.6
    Locus tag
    GLYMA_10G173700v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC778112 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (40857143..40871813, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (40750698..40765419, complement)

    Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene aluminum-activated malate transporter family protein Neighboring gene transcription factor bHLH155 Neighboring gene uncharacterized LOC100813397 Neighboring gene cwf18 domain-containing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dof zinc finger protein DOF4.6
    Names
    Dof19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      40857143..40871813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006589177.4 → XP_006589240.1  dof zinc finger protein DOF4.6 isoform X1

      See identical proteins and their annotated locations for XP_006589240.1

      Conserved Domains (1) summary
      pfam02701
      Location:47 → 103
      zf-Dof; Dof domain, zinc finger

    2. XM_041005789.1 → XP_040861723.1  dof zinc finger protein DOF4.6 isoform X2

      Conserved Domains (1) summary
      pfam02701
      Location:47 → 103
      zf-Dof; Dof domain, zinc finger

    3. XM_041005787.1 → XP_040861721.1  dof zinc finger protein DOF4.6 isoform X1

      Conserved Domains (1) summary
      pfam02701
      Location:47 → 103
      zf-Dof; Dof domain, zinc finger

    4. XM_041005788.1 → XP_040861722.1  dof zinc finger protein DOF4.6 isoform X1

      Conserved Domains (1) summary
      pfam02701
      Location:47 → 103
      zf-Dof; Dof domain, zinc finger

    5. XM_006589176.4 → XP_006589239.1  dof zinc finger protein DOF4.6 isoform X1

      See identical proteins and their annotated locations for XP_006589239.1

      Conserved Domains (1) summary
      pfam02701
      Location:47 → 103
      zf-Dof; Dof domain, zinc finger

    6. XM_006589178.4 → XP_006589241.1  dof zinc finger protein DOF4.6 isoform X3

      Conserved Domains (1) summary
      pfam02701
      Location:44 → 100
      zf-Dof; Dof domain, zinc finger

    7. XM_041005790.1 → XP_040861724.1  dof zinc finger protein DOF4.6 isoform X4

      Conserved Domains (1) summary
      pfam02701
      Location:44 → 100
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version

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