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    Tmem200a transmembrane protein 200A [ Mus musculus (house mouse) ]

    Gene ID: 77220, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tmem200aprovided by MGI
    Official Full Name
    transmembrane protein 200Aprovided by MGI
    Primary source
    MGI:MGI:1924470
    See related
    Ensembl:ENSMUSG00000049420 AllianceGenome:MGI:1924470
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C030003D03Rik
    Summary
    Predicted to be located in membrane. Orthologous to human TMEM200A (transmembrane protein 200A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in adrenal adult (RPKM 8.0), whole brain E14.5 (RPKM 4.2) and 13 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Tmem200a in Genome Data Viewer
    Location:
    10 A4; 10 13.03 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (25867080..25955713, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (25991182..26079209, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930401C15 gene Neighboring gene nucleoporin 88 pseudogene Neighboring gene high mobility group box 2 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_26112 Neighboring gene STARR-seq mESC enhancer starr_26113 Neighboring gene STARR-seq mESC enhancer starr_26116 Neighboring gene STARR-seq mESC enhancer starr_26117 Neighboring gene STARR-seq mESC enhancer starr_26119 Neighboring gene predicted gene 9767 Neighboring gene high mobility group box 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26120 Neighboring gene STARR-seq mESC enhancer starr_26121 Neighboring gene sterile alpha motif domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala. Boyle MP, et al. J Comp Neurol, 2011 Aug 1. PMID 21491433
    2. Three-dimensional molecular architecture of mouse organogenesis. Qu F, et al. Nat Commun, 2023 Jul 31. PMID 37524711, Free PMC Article
    3. Identification of new ciliary signaling pathways in the brain and insights into neurological disorders. Loukil A, et al. bioRxiv, 2023 Dec 21. PMID 38187761, Free PMC Article
    4. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
    5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 200A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358814.1 → NP_001345743.1  transmembrane protein 200A

      Status: VALIDATED

      Source sequence(s)
      AI482494, AK048673
      Consensus CDS
      CCDS23755.1
      UniProtKB/Swiss-Prot
      Q69Z67, Q8C817, Q8CCL5
      UniProtKB/TrEMBL
      B2RUN2
      Related
      ENSMUSP00000151861.2, ENSMUST00000218232.2
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; Uncharacterized conserved protein (DUF2371)

    2. NM_029881.4 → NP_084157.2  transmembrane protein 200A

      See identical proteins and their annotated locations for NP_084157.2

      Status: VALIDATED

      Source sequence(s)
      AI482494, AK173299
      Consensus CDS
      CCDS23755.1
      UniProtKB/Swiss-Prot
      Q69Z67, Q8C817, Q8CCL5
      UniProtKB/TrEMBL
      B2RUN2
      Related
      ENSMUSP00000064080.7, ENSMUST00000066049.7
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; Uncharacterized conserved protein (DUF2371)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      25867080..25955713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156087.1 → XP_036011980.1  transmembrane protein 200A isoform X1

      Conserved Domains (1) summary
      pfam10177
      Location:23 → 168
      DUF2371; Uncharacterized conserved protein (DUF2371)

    2. XM_017314147.3 → XP_017169636.1  transmembrane protein 200A isoform X1

      Conserved Domains (1) summary
      pfam10177
      Location:23 → 168
      DUF2371; Uncharacterized conserved protein (DUF2371)

    3. XM_036156088.1 → XP_036011981.1  transmembrane protein 200A isoform X2

      UniProtKB/Swiss-Prot
      Q69Z67, Q8C817, Q8CCL5
      UniProtKB/TrEMBL
      B2RUN2
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; Uncharacterized conserved protein (DUF2371)

    4. XM_006512920.3 → XP_006512983.1  transmembrane protein 200A isoform X2

      See identical proteins and their annotated locations for XP_006512983.1

      UniProtKB/Swiss-Prot
      Q69Z67, Q8C817, Q8CCL5
      UniProtKB/TrEMBL
      B2RUN2
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; Uncharacterized conserved protein (DUF2371)

    5. XM_006512921.5 → XP_006512984.1  transmembrane protein 200A isoform X2

      See identical proteins and their annotated locations for XP_006512984.1

      UniProtKB/Swiss-Prot
      Q69Z67, Q8C817, Q8CCL5
      UniProtKB/TrEMBL
      B2RUN2
      Conserved Domains (1) summary
      pfam10177
      Location:16 → 161
      DUF2371; Uncharacterized conserved protein (DUF2371)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C817.1 GenPept UniProtKB/Swiss-Prot:Q8C817

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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