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    G542_RS0111095 sigma-54 dependent transcriptional regulator [ Laribacter hongkongensis DSM 14985 ]

    Gene ID: 75109987, updated on 10-Oct-2024

    Summary

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    Gene symbol
    G542_RS0111095
    Gene description
    sigma-54 dependent transcriptional regulator
    Locus tag
    G542_RS0111095
    Gene type
    protein coding
    Organism
    Laribacter hongkongensis DSM 14985 (strain: DSM 14985, nat-host: Homo sapiens, culture-collection: DSM:14985, type-material: type strain of Laribacter hongkongensis)
    Lineage
    Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Aquaspirillaceae; Laribacter
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    Genomic context

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    NZ_AUHR01000012.1Genomic Context describing neighboring genes Neighboring gene low molecular weight protein-tyrosine-phosphatase Neighboring gene EAL domain-containing protein Neighboring gene chemotaxis protein CheB Neighboring gene flagellar hook-basal body complex protein FliE Neighboring gene flagellar basal-body MS-ring/collar protein FliF Neighboring gene FliH/SctL family protein Neighboring gene flagellar motor switch protein FliG Neighboring gene flagellar protein export ATPase FliI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_AUHR01000012.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism. Shingler V. Mol Microbiol, 1996 Feb. PMID 8830233

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    sigma-54 dependent transcriptional regulator

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_AUHR01000012.1 Reference assembly

      Range
      61612..63015
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012697831.1 sigma-54 dependent transcriptional regulator [Laribacter hongkongensis]

      See identical proteins and their annotated locations for WP_012697831.1

      UniProtKB/TrEMBL
      A0AAP2WXF4, C1DB06
      Conserved Domains (4) summary
      COG2204
      Location:1 → 448
      AtoC; DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]
      cd00156
      Location:7 → 118
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
      pfam00158
      Location:135 → 299
      Sigma54_activat; Sigma-54 interaction domain
      pfam02954
      Location:410 → 447
      HTH_8; Bacterial regulatory protein, Fis family