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    LOC7485264 autophagy-related protein 11 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7485264, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7485264
    Gene description
    autophagy-related protein 11
    Locus tag
    POPTR_006G180800v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7485264 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (18722490..18729451, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (19481357..19488319, complement)

    Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7465974 Neighboring gene uncharacterized LOC7465973 Neighboring gene uncharacterized LOC7485263 Neighboring gene mitogen-activated protein kinase kinase kinase 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables molecular adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in reticulophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      18722490..18729451 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002308379.4 → XP_002308415.1  autophagy-related protein 11

      See identical proteins and their annotated locations for XP_002308415.1

      UniProtKB/TrEMBL
      B9HB54
      Conserved Domains (3) summary
      pfam04108
      Location:158 → 497
      APG17; Autophagy protein Apg17
      pfam10377
      Location:998 → 1145
      ATG11; Autophagy-related protein 11
      cl25732
      Location:829 → 1015
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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