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    LOC7464283 importin subunit beta-1 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7464283, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7464283
    Gene description
    importin subunit beta-1
    Locus tag
    POPTR_012G017500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7464283 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 12 NC_037296.2 (1935868..1940291, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 12 NC_037296.1 (1641544..1645977, complement)

    Chromosome 12 - NC_037296.2Genomic Context describing neighboring genes Neighboring gene RNA-binding KH domain-containing protein RCF3 Neighboring gene uncharacterized LOC18108872 Neighboring gene luminal-binding protein 5 Neighboring gene acyl-CoA-binding domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin subunit beta-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037296.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      1935868..1940291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002318401.4 → XP_002318437.1  importin subunit beta-1

      See identical proteins and their annotated locations for XP_002318437.1

      UniProtKB/TrEMBL
      A0A2K1XG87, B9I1Y1
      Conserved Domains (2) summary
      COG5215
      Location:14 → 871
      KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
      sd00044
      Location:322 → 355
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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