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    LOC7459121 ubiquitin carboxyl-terminal hydrolase 15 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7459121, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7459121
    Gene description
    ubiquitin carboxyl-terminal hydrolase 15
    Locus tag
    POPTR_001G378900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7459121 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (39957076..39964809)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (39536641..39544527)

    Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127904269 Neighboring gene heavy metal-associated isoprenylated plant protein 41 Neighboring gene uncharacterized LOC7491354 Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      39957076..39964809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024603156.2 → XP_024458924.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

      Conserved Domains (2) summary
      cd02661
      Location:429 → 733
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:76 → 113
      zf-MYND; MYND finger

    2. XM_024603164.2 → XP_024458932.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X3

      UniProtKB/TrEMBL
      A0A3N7EMK7
      Conserved Domains (2) summary
      cd02661
      Location:369 → 673
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:76 → 113
      zf-MYND; MYND finger

    3. XM_024603151.2 → XP_024458919.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      UniProtKB/TrEMBL
      A0A2K2CA77
      Conserved Domains (2) summary
      cd02661
      Location:430 → 734
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:76 → 113
      zf-MYND; MYND finger

    4. XM_024603145.2 → XP_024458913.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

      UniProtKB/TrEMBL
      A0A2K2CA77
      Conserved Domains (2) summary
      cd02661
      Location:430 → 734
      Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam01753
      Location:76 → 113
      zf-MYND; MYND finger
    Nucleotide Protein
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