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    LOC7458038 probable BOI-related E3 ubiquitin-protein ligase 2 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7458038, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7458038
    Gene description
    probable BOI-related E3 ubiquitin-protein ligase 2
    Locus tag
    POPTR_012G082200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7458038 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 12 NC_037296.2 (10741759..10745198, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 12 NC_037296.1 (10908806..10912356, complement)

    Chromosome 12 - NC_037296.2Genomic Context describing neighboring genes Neighboring gene transcription factor MYB98 Neighboring gene phosphoenolpyruvate/phosphate translocator 1, chloroplastic Neighboring gene uncharacterized LOC7458039 Neighboring gene uncharacterized LOC7456896

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable BOI-related E3 ubiquitin-protein ligase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037296.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      10741759..10745198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024581905.2 → XP_024437673.1  probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1

      UniProtKB/TrEMBL
      U5FXL5
      Conserved Domains (1) summary
      cl17238
      Location:278 → 331
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_024581906.2 → XP_024437674.1  probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1

      UniProtKB/TrEMBL
      U5FXL5
      Conserved Domains (1) summary
      cl17238
      Location:278 → 331
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_006376802.3 → XP_006376864.1  probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1

      See identical proteins and their annotated locations for XP_006376864.1

      UniProtKB/TrEMBL
      U5FXL5
      Conserved Domains (1) summary
      cl17238
      Location:278 → 331
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_052446165.1 → XP_052302125.1  probable BOI-related E3 ubiquitin-protein ligase 2 isoform X1

      UniProtKB/TrEMBL
      U5FXL5

    5. XM_024581907.2 → XP_024437675.1  probable BOI-related E3 ubiquitin-protein ligase 2 isoform X2

      Conserved Domains (1) summary
      cl17238
      Location:263 → 316
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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