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    PHATRDRAFT_41702 predicted protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7196707, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PHATRDRAFT_41702
    Gene description
    predicted protein
    Locus tag
    PHATRDRAFT_41702
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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    Genomic context

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    See PHATRDRAFT_41702 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_011669.1 (1944523..1946669)

    Chromosome 1 - NC_011669.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene predicted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_011669.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tryptophan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tryptophan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011669.1 Reference assembly

      Range
      1944523..1946669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002176841.1 → XP_002176877.1  predicted protein [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002176877.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7FQI2
      Conserved Domains (3) summary
      PRK04346
      Location:281 → 671
      PRK04346; tryptophan synthase subunit beta; Validated
      PRK13111
      Location:11 → 267
      trpA; tryptophan synthase subunit alpha; Provisional
      pfam00291
      Location:330 → 654
      PALP; Pyridoxal-phosphate dependent enzyme
    Nucleotide Protein
    Heading Accession and Version

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