1700003E16Rik RIKEN cDNA 1700003E16 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 1700003E16Rikprovided by MGI
Official Full Name: RIKEN cDNA 1700003E16 geneprovided by MGI
Primary source: MGI:MGI:1919087
See related: Ensembl:ENSMUSG00000030030 AllianceGenome:MGI:1919087
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Is expressed in choroid invagination; metencephalon part of 4th ventricle choroid plexus; olfactory epithelium; and palatal shelf epithelium. Orthologous to human C2orf81 (chromosome 2 open reading frame 81). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in testis adult (RPKM 260.7) and cortex adult (RPKM 6.8) See more
Orthologs: human all
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Genomic context

Location:: 6 C3; 6 35.94 cM

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	6	NC_000072.7 (83133386..83139957)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	6	NC_000072.6 (83156404..83162975)

Chromosome 6 - NC_000072.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

1700003E16Rik is most abundantly expressed in tissues rich in highly ciliated cells, such as olfactory sensory neurons, and is predicted to be important to cilia.
Title: Tissue expression patterns identify mouse cilia genes.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: uncharacterized protein C2orf81 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_027948.1 → NP_082224.1 uncharacterized protein C2orf81 homolog

See identical proteins and their annotated locations for NP_082224.1

Status: VALIDATED

Source sequence(s)

AK005628, BB429769, BC126949, BF452482, BY253424, CK137463

Consensus CDS

CCDS51818.1

UniProtKB/Swiss-Prot

A0JNU0, Q9DAQ4

Related

ENSMUSP00000032106.5, ENSMUST00000032106.6

Conserved Domains (2) summary

pfam15479
Location:6 → 571

DUF4639; Domain of unknown function (DUF4639)

cl22861
Location:436 → 463

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...