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    SJAG_02419 ubiquitin carboxy terminal hydrolase Ubp3 [ Schizosaccharomyces japonicus yFS275 ]

    Gene ID: 7050064, updated on 17-May-2024

    Summary

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    Gene symbol
    SJAG_02419
    Gene description
    ubiquitin carboxy terminal hydrolase Ubp3
    Locus tag
    SJAG_02419
    See related
    FungiDB:SJAG_02419; VEuPathDB:SJAG_02419
    Gene type
    protein coding
    RNA name
    ubiquitin carboxy terminal hydrolase Ubp3
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces japonicus yFS275 (strain: yFS275)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See SJAG_02419 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    2

    NW_011627860.1Genomic Context describing neighboring genes Neighboring gene FACT complex component Spt16 Neighboring gene RNA methyltransferase Nop2 Neighboring gene HDEL receptor Neighboring gene TENA/THI family protein Neighboring gene TENA/THI family protein Neighboring gene GDP dissociation inhibitor Gdi1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011627860.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative functional genomics of the fission yeasts. Rhind N, et al. Science, 2011 May 20. PMID 21511999, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by JaponicusDB

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal-dependent deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasm protein quality control by the ubiquitin-proteasome system IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of retrograde vesicle-mediated transport, Golgi to ER IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Names
    ubiquitin carboxy terminal hydrolase Ubp3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_011627860.1 Reference assembly

      Range
      697825..700242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002173589.2 → XP_002173625.1  ubiquitin carboxy terminal hydrolase Ubp3 [Schizosaccharomyces japonicus yFS275]

      See identical proteins and their annotated locations for XP_002173625.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B6K2F1
      Conserved Domains (2) summary
      cd02257
      Location:252 → 520
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:159 → 520
      UCH; Ubiquitin carboxyl-terminal hydrolase
    Nucleotide Protein
    Heading Accession and Version

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