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    LHX2 LIM homeobox 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694945, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LHX2provided by VGNC
    Official Full Name
    LIM homeobox 2provided by VGNC
    Primary source
    VGNC:VGNC:74262
    See related
    Ensembl:ENSMMUG00000003671
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LHX2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (16652629..16674142, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (15026011..15047516, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 7 Neighboring gene NIMA related kinase 6 Neighboring gene transcription factor BTF3-like Neighboring gene uncharacterized LOC106993611 Neighboring gene DENN domain containing 1A Neighboring gene phosphatidylinositol-glycan biosynthesis class F protein pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261792.1 → NP_001248721.1  LIM/homeobox protein Lhx2

      See identical proteins and their annotated locations for NP_001248721.1

      Status: PROVISIONAL

      Source sequence(s)
      JU337139
      UniProtKB/TrEMBL
      F6TBF3, G7NFT9
      Related
      ENSMMUP00000004894.2, ENSMMUT00000005196.4
      Conserved Domains (4) summary
      cd09377
      Location:111 → 169
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:43 → 106
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:270 → 322
      Homeobox; Homeobox domain
      cl27820
      Location:247 → 378
      Abdominal-A; Homeobox protein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      16652629..16674142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials