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    Tex38 testis expressed 38 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690079, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Tex38provided by RGD
    Official Full Name
    testis expressed 38provided by RGD
    Primary source
    RGD:1585134
    See related
    EnsemblRapid:ENSRNOG00000010162 AllianceGenome:RGD:1585134
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Atpaf1-as1
    Summary
    Predicted to be located in membrane. Orthologous to human TEX38 (testis expressed 38). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 19.8), Adrenal (RPKM 2.5) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tex38 in Genome Data Viewer
    Location:
    5q35
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (134498309..134502352, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (129260652..129265086, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (134635913..134641376, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134487082 Neighboring gene EF-hand calcium binding domain 14 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 1 Neighboring gene MOB kinase activator 3C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    testis-expressed protein 38
    Names
    ATPAF1 antisense RNA 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109566.1 → NP_001103036.1  testis-expressed protein 38

      See identical proteins and their annotated locations for NP_001103036.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474008
      UniProtKB/TrEMBL
      A6JZ46, D3ZTL9
      Related
      ENSRNOP00000013480.3, ENSRNOT00000013480.6
      Conserved Domains (1) summary
      pfam15834
      Location:1 → 200
      THEG4; Testis highly expressed protein 4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      134498309..134502352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238719.5 → XP_006238781.1  testis-expressed protein 38 isoform X1

      UniProtKB/TrEMBL
      D3ZTL9
      Related
      ENSRNOP00000083455.2, ENSRNOT00000112778.2
      Conserved Domains (1) summary
      pfam15834
      Location:6 → 205
      THEG4; Testis highly expressed protein 4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.