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    Otd1 orthodenticle-1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 641553, updated on 12-Apr-2024

    Summary

    Gene symbol
    Otd1
    Gene description
    orthodenticle-1
    Locus tag
    TcasGA2_TC003354
    See related
    BEETLEBASE:TC003354
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    oc; otd; otd-1; ocelliless
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    Genomic context

    See Otd1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 1 NC_087394.1 (34553442..34599598, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG3 NC_007418.3 (2022498..2068549)

    Chromosome 1 - NC_087394.1Genomic Context describing neighboring genes Neighboring gene mitochondrial inner membrane protease subunit 2 Neighboring gene KICSTOR complex protein ITFG2 Neighboring gene orthodenticle-2 Neighboring gene tyrosine-protein kinase-like otk Neighboring gene uncharacterized LOC107397482 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene uncharacterized LOC103312267

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    orthodenticle-1
    Names
    AUGUSTUS-3.0.2_03354
    GLEAN_03354

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039424.1NP_001034513.1  orthodenticle-1

      See identical proteins and their annotated locations for NP_001034513.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ223627
      UniProtKB/TrEMBL
      O46169
      Conserved Domains (1) summary
      pfam00046
      Location:131183
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087394.1 Reference icTriCast1.1 Primary Assembly

      Range
      34553442..34599598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015977567.2XP_015833053.1  orthodenticle-1 isoform X3

      Conserved Domains (1) summary
      pfam00046
      Location:72124
      Homeobox; Homeobox domain
    2. XM_008192467.3XP_008190689.1  orthodenticle-1 isoform X1

      See identical proteins and their annotated locations for XP_008190689.1

      UniProtKB/TrEMBL
      O46169
      Conserved Domains (1) summary
      pfam00046
      Location:131183
      Homeobox; Homeobox domain
    3. XM_008192468.3XP_008190690.1  orthodenticle-1 isoform X2

      Conserved Domains (1) summary
      pfam00046
      Location:125177
      Homeobox; Homeobox domain