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    PtrM4_058360 40S ribosomal protein uS2 [ Pyrenophora tritici-repentis ]

    Gene ID: 6340598, updated on 10-Jul-2024

    Summary

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    Gene symbol
    PtrM4_058360
    Gene description
    40S ribosomal protein uS2
    Locus tag
    PtrM4_058360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pyrenophora tritici-repentis (strain: M4, nat-host: Triticum aestivum)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora
    Old locus tag
    PTRG_02326
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    Genomic context

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    See PtrM4_058360 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_089391.1 (978238..979246)

    Chromosome 2 - NC_089391.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene mitochondrial 37S ribosomal protein uS15m Neighboring gene 1,3-beta-glucanosyltransferase gel3 precursor Neighboring gene Spc97-Spc98 domain containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089391.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity. Moolhuijzen P, et al. BMC Genomics, 2018 Apr 23. PMID 29685100, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein uS2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_089391.1 Reference assembly

      Range
      978238..979246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001932624.2 → XP_001932659.1  40S ribosomal protein uS2 [Pyrenophora tritici-repentis]

      See identical proteins and their annotated locations for XP_001932659.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      B2VY36
      UniProtKB/TrEMBL
      A0A2W1EC27
      Conserved Domains (1) summary
      PTZ00254
      Location:4 → 246
      PTZ00254; 40S ribosomal protein SA; Provisional
    Nucleotide Protein
    Heading Accession and Version

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