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    UPK1B uroplakin 1B [ Canis lupus familiaris (dog) ]

    Gene ID: 608131, updated on 17-Aug-2024

    Summary

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    Official Symbol
    UPK1Bprovided by VGNC
    Official Full Name
    uroplakin 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:48155
    See related
    Ensembl:ENSCAFG00845016173
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See UPK1B in Genome Data Viewer
    Location:
    chromosome: 33
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (23104228..23133699)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (22898381..22927977)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (23512548..23542150)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (22907345..22936917)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (22945005..22974600)

    Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 11 Neighboring gene uncharacterized LOC119867334 Neighboring gene uncharacterized LOC102155007 Neighboring gene testis expressed 55 Neighboring gene beta-1,4-galactosyltransferase 4 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uroplakin-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051837.1 Reference ROS_Cfam_1.0

      Range
      23104228..23133699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038445046.1 → XP_038300974.1  uroplakin-1b

      UniProtKB/TrEMBL
      A0A8C0K1Y0, A0A8C0MND4, A0A8I3NPV3, A0A8P0NXT7, A0A8P0TD48
      Related
      ENSCAFP00845022639.1, ENSCAFT00845028764.1
      Conserved Domains (2) summary
      cd03156
      Location:118 → 230
      uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:14 → 241
      Tetraspannin; Tetraspanin family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049293.1 Alternate UMICH_Zoey_3.1

      Range
      22907345..22936917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038519305.1 → XP_038375233.1  uroplakin-1b

      Conserved Domains (2) summary
      cd03156
      Location:118 → 230
      uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:14 → 241
      Tetraspannin; Tetraspanin family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

      Range
      22945005..22974600
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038647312.1 → XP_038503240.1  uroplakin-1b

      Conserved Domains (2) summary
      cd03156
      Location:118 → 230
      uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:14 → 241
      Tetraspannin; Tetraspanin family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

      Range
      23512548..23542150
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038582925.1 → XP_038438853.1  uroplakin-1b

      UniProtKB/TrEMBL
      A0A8C0K1Y0, A0A8C0MND4, A0A8I3NPV3, A0A8P0NXT7, A0A8P0TD48
      Conserved Domains (2) summary
      cd03156
      Location:118 → 230
      uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:14 → 241
      Tetraspannin; Tetraspanin family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      22898381..22927977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_845047.5 → XP_850140.2  uroplakin-1b

      See identical proteins and their annotated locations for XP_850140.2

      UniProtKB/TrEMBL
      A0A8C0K1Y0, A0A8C0MND4, A0A8I3NPV3, A0A8P0NXT7, A0A8P0TD48
      Conserved Domains (2) summary
      cd03156
      Location:118 → 230
      uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:14 → 241
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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