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    LOC606458 knotted related homeobox 8 [ Zea mays ]

    Gene ID: 606458, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC606458
    Gene description
    knotted related homeobox 8
    Locus tag
    ZEAMMB73_Zm00001d034212
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    knox8; knox8a; GRMZM2G135447
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    Genomic context

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    See LOC606458 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (288574185..288584045)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (286886924..286896784)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103644079 Neighboring gene small nucleolar RNA R41 Neighboring gene U2 spliceosomal RNA Neighboring gene inositol transporter 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    knotted related homeobox 8
    Names
    HB-type transcription factor
    cR18
    homeobox protein knotted-1-like 12
    homeobox protein rough sheath 1
    knotted 1-type homeobox protein 8
    pge(F8)
    pge16c(knox8)
    putative knotted-like transcription factor family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001319770.1 → NP_001306699.1  knotted related homeobox 8 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BT036681
      UniProtKB/TrEMBL
      A0A804M4S0, B4FHU3, K4JFG7
      Conserved Domains (4) summary
      pfam03789
      Location:237 → 258
      ELK; ELK domain
      pfam03790
      Location:101 → 140
      KNOX1; KNOX1 domain
      pfam03791
      Location:161 → 204
      KNOX2; KNOX2 domain
      pfam05920
      Location:277 → 316
      Homeobox_KN; Homeobox KN domain

    2. NM_001372048.1 → NP_001358977.1  knotted related homeobox 8 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000012
      UniProtKB/TrEMBL
      A0A317Y0R9
      Conserved Domains (4) summary
      pfam03789
      Location:276 → 297
      ELK; ELK domain
      pfam03790
      Location:140 → 179
      KNOX1; KNOX1 domain
      pfam03791
      Location:200 → 243
      KNOX2; KNOX2 domain
      pfam05920
      Location:316 → 355
      Homeobox_KN; Homeobox KN domain

    3. NM_001372049.1 → NP_001358978.1  knotted related homeobox 8 isoform 3

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000012
      UniProtKB/TrEMBL
      A0A804M4S0
      Conserved Domains (4) summary
      pfam03789
      Location:190 → 211
      ELK; ELK domain
      pfam03790
      Location:100 → 125
      KNOX1; KNOX1 domain
      pfam03791
      Location:124 → 157
      KNOX2; KNOX2 domain
      pfam05920
      Location:230 → 269
      Homeobox_KN; Homeobox KN domain

    RNA

    1. NR_164074.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000012

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      288574185..288584045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035961223.1 → XP_035817116.1  knotted related homeobox 8 isoform X2

      UniProtKB/TrEMBL
      A0A804M4S0, B4FHU3, K4JFG7
      Conserved Domains (4) summary
      pfam03789
      Location:237 → 258
      ELK; ELK domain
      pfam03790
      Location:101 → 140
      KNOX1; KNOX1 domain
      pfam03791
      Location:161 → 204
      KNOX2; KNOX2 domain
      pfam05920
      Location:277 → 316
      Homeobox_KN; Homeobox KN domain

    2. XM_035961222.1 → XP_035817115.1  knotted related homeobox 8 isoform X1

      UniProtKB/TrEMBL
      A0A804M4S0
      Conserved Domains (4) summary
      pfam03789
      Location:262 → 283
      ELK; ELK domain
      pfam03790
      Location:126 → 165
      KNOX1; KNOX1 domain
      pfam03791
      Location:186 → 229
      KNOX2; KNOX2 domain
      pfam05920
      Location:302 → 341
      Homeobox_KN; Homeobox KN domain

    3. XM_035961224.1 → XP_035817117.1  knotted related homeobox 8 isoform X3

      UniProtKB/TrEMBL
      A0A317Y0R9
      Conserved Domains (4) summary
      pfam03789
      Location:230 → 251
      ELK; ELK domain
      pfam03790
      Location:140 → 165
      KNOX1; KNOX1 domain
      pfam03791
      Location:164 → 197
      KNOX2; KNOX2 domain
      pfam05920
      Location:270 → 309
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials