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    SNOG_12873 hypothetical protein [ Parastagonospora nodorum SN15 ]

    Gene ID: 5980002, updated on 16-Nov-2023

    Summary

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    Gene symbol
    SNOG_12873
    Gene description
    hypothetical protein
    Locus tag
    SNOG_12873
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Parastagonospora nodorum SN15 (strain: SN15)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora
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    Genomic context

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    See SNOG_12873 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_001884572.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001884572.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    • gene prediction version 2

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_001803089.1
    • gene prediction version 2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001884572.1 Reference assembly

      Range
      179456..187132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001803037.1 → XP_001803089.1  hypothetical protein SNOG_12873 [Parastagonospora nodorum SN15]

      See identical proteins and their annotated locations for XP_001803089.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7U2FF49, Q0U5U1
      Conserved Domains (3) summary
      cl02553
      Location:1439 → 1785
      Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
      pfam00443
      Location:1440 → 1781
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam12030
      Location:1998 → 2294
      DUF3517; Domain of unknown function (DUF3517)
    Nucleotide Protein
    Heading Accession and Version

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