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    SNOG_07327 hypothetical protein [ Parastagonospora nodorum SN15 ]

    Gene ID: 5974559, updated on 25-Jan-2024

    Summary

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    Gene symbol
    SNOG_07327
    Gene description
    hypothetical protein
    Locus tag
    SNOG_07327
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Parastagonospora nodorum SN15 (strain: SN15)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora
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    Genomic context

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    See SNOG_07327 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    3

    NW_001884559.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_001884559.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • gene prediction version 2

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_001797666.1
    • gene prediction version 2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001884559.1 Reference assembly

      Range
      119803..121725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001797614.1 → XP_001797666.1  hypothetical protein SNOG_07327 [Parastagonospora nodorum SN15]

      See identical proteins and their annotated locations for XP_001797666.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7U2EVU8, Q0ULN7
      Conserved Domains (3) summary
      COG2319
      Location:301 → 607
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:345 → 382
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:332 → 555
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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