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    rpgrip1l RPGRIP1 like [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 585739, updated on 17-Aug-2024

    Summary

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    Symbol
    rpgrip1l
    Full Name
    RPGRIP1 like
    Primary source
    EchinoBase:ECB-GENE-23181667
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See rpgrip1l in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (2667959..2697031)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577031.1 (265130..297283)

    NW_022145614.1Genomic Context describing neighboring genes Neighboring gene interaptin Neighboring gene lysosomal protective protein Neighboring gene uncharacterized LOC105446690 Neighboring gene catenin beta like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in non-motile cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ciliary transition zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein fantom

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

      Range
      2667959..2697031
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030976243.1 → XP_030832103.1  protein fantom isoform X1

      UniProtKB/TrEMBL
      A0A7M7SUH0
      Conserved Domains (4) summary
      cd00030
      Location:796 → 903
      C2; C2 domain
      COG1196
      Location:201 → 554
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam11618
      Location:602 → 744
      C2-C2_1; First C2 domain of RPGR-interacting protein 1
      pfam18111
      Location:1263 → 1430
      RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal

    2. XM_030976244.1 → XP_030832104.1  protein fantom isoform X2

      UniProtKB/TrEMBL
      A0A7M7SUH0
      Conserved Domains (4) summary
      cd00030
      Location:796 → 903
      C2; C2 domain
      COG1196
      Location:201 → 554
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam11618
      Location:602 → 744
      C2-C2_1; First C2 domain of RPGR-interacting protein 1
      pfam18111
      Location:1263 → 1430
      RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal

    3. XM_030976245.1 → XP_030832105.1  protein fantom isoform X3

      UniProtKB/TrEMBL
      A0A7M7N6R8

    4. XM_030976246.1 → XP_030832106.1  protein fantom isoform X4

      UniProtKB/TrEMBL
      A0A7M7N8L5
      Conserved Domains (4) summary
      cd00030
      Location:796 → 903
      C2; C2 domain
      COG1196
      Location:201 → 554
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam11618
      Location:602 → 744
      C2-C2_1; First C2 domain of RPGR-interacting protein 1
      pfam18111
      Location:1229 → 1396
      RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal
    Nucleotide Protein
    Heading Accession and Version

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