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    HER10_EVM0007968 glycosyl hydrolase family 20 [ Colletotrichum scovillei ]

    Gene ID: 55982023, updated on 30-Nov-2023

    Summary

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    Gene symbol
    HER10_EVM0007968
    Gene description
    glycosyl hydrolase family 20
    Locus tag
    HER10_EVM0007968
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Colletotrichum scovillei (strain: TJNH1, nat-host: Capsicum annuum)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum acutatum species complex
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    Genomic context

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    See HER10_EVM0007968 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    4

    NW_023336259.1Genomic Context describing neighboring genes Neighboring gene amino acid permease Neighboring gene hsp90-like protein Neighboring gene uncharacterized protein Neighboring gene acetyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023336259.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome Sequence Resource for Colletotrichum scovillei, the Cause of Anthracnose Disease of Chili. Huo J, et al. Mol Plant Microbe Interact, 2021 Jan. PMID 33006530
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-N-acetylhexosaminidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycosyl hydrolase family 20

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_023336259.1 Reference assembly

      Range
      4140578..4142949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035477506.1 → XP_035338609.1  glycosyl hydrolase family 20 [Colletotrichum scovillei]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A9P7UHD9
      Conserved Domains (2) summary
      cd06564
      Location:170 → 501
      GH20_DspB_LnbB-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6) ...
      cl03741
      Location:29 → 148
      Glyco_hydro_20b; Glycosyl hydrolase family 20, domain 2
    Nucleotide Protein
    Heading Accession and Version

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