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    LOC5580286 uncharacterized LOC5580286 [ Aedes aegypti (yellow fever mosquito) ]

    Gene ID: 5580286, updated on 23-Mar-2024

    Summary

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    Gene symbol
    LOC5580286
    Gene description
    uncharacterized LOC5580286
    See related
    VectorBase:AAEL002989
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aedes aegypti
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
    Also known as
    AAEL002989
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    Genomic context

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    See LOC5580286 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current AaegL5.0 (GCF_002204515.2) 1 NC_035107.1 (208899653..208912763)

    Chromosome 1 - NC_035107.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5580288 Neighboring gene uncharacterized LOC110681505 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene uncharacterized LOC5580285 Neighboring gene 39S ribosomal protein L43, mitochondrial-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_035107.1 Chromosome 1 Reference AaegL5.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC5580286

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AaegL5.0 Primary Assembly

    Genomic

    1. NC_035107.1 Reference AaegL5.0 Primary Assembly

      Range
      208899653..208912763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001662863.2 → XP_001662913.1  uncharacterized protein LOC5580286

      See identical proteins and their annotated locations for XP_001662913.1

      UniProtKB/TrEMBL
      A0A1S4F3B3, Q17GH0
      Conserved Domains (2) summary
      smart00868
      Location:9 → 84
      zf-AD; Zinc-finger associated domain (zf-AD)
      smart01025
      Location:261 → 314
      BEN; The BEN domain is found in diverse animal proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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