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    MMP2 matrix metalloproteinase MMP2 [ Glycine max (soybean) ]

    Gene ID: 548001, updated on 7-Dec-2023

    Summary

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    Gene symbol
    MMP2
    Gene description
    matrix metalloproteinase MMP2
    Locus tag
    GLYMA_01G036900v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See MMP2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (3913412..3914721, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (3922276..3923585, complement)

    Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102661099 Neighboring gene protein JINGUBANG Neighboring gene metalloendoproteinase 5-MMP Neighboring gene metalloendoproteinase 5-MMP

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The matrix metalloproteinase gene GmMMP2 is activated in response to pathogenic infections in soybean. Liu Y, et al. Plant Physiol, 2001 Dec. PMID 11743122, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    matrix metalloproteinase MMP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001250301.2 → NP_001237230.2  matrix metalloproteinase MMP2 precursor

      Status: VALIDATED

      Source sequence(s)
      ACUP04000033, AY057902
      UniProtKB/TrEMBL
      C6TMH1, I1J5F0, Q93Z89
      Conserved Domains (2) summary
      pfam01471
      Location:74 → 133
      PG_binding_1; Putative peptidoglycan binding domain
      cl00064
      Location:163 → 324
      ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      3913412..3914721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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