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    SOYGBFA G-box binding factor [ Glycine max (soybean) ]

    Gene ID: 547788, updated on 7-Dec-2023

    Summary

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    Gene symbol
    SOYGBFA
    Gene description
    G-box binding factor
    Locus tag
    GLYMA_11G065000v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GBF1; bZIP116; bZIP118
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    Genomic context

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    See SOYGBFA in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (4910049..4915388)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (4916877..4922215)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 Neighboring gene homeobox-leucine zipper protein ATHB-40 Neighboring gene HVA22-like protein k-like Neighboring gene scarecrow-like protein 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene. Hong JC, et al. Plant J, 1995 Aug. PMID 7670504
    2. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Liao Y, et al. Planta, 2008 Jul. PMID 18365246
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-box binding factor
    Names
    bZIP transcription factor bZIP118
    transcription factor bZIP116

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001250990.2 → NP_001237919.2  G-box binding factor

      Status: VALIDATED

      Source sequence(s)
      ACUP04003801
      UniProtKB/TrEMBL
      I1LHN8, Q43449
      Conserved Domains (3) summary
      smart00338
      Location:262 → 326
      BRLZ; basic region leucin zipper
      cd14702
      Location:267 → 317
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 95
      MFMR; G-box binding protein MFMR

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      4910049..4915388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014763528.2 → XP_014619014.1  G-box binding factor isoform X4

      UniProtKB/TrEMBL
      K7LNE0, Q43449
      Conserved Domains (3) summary
      smart00338
      Location:247 → 311
      BRLZ; basic region leucin zipper
      cd14702
      Location:252 → 302
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 80
      MFMR; G-box binding protein MFMR

    2. XM_014763527.3 → XP_014619013.1  G-box binding factor isoform X3

      UniProtKB/TrEMBL
      I1LHN8, Q43449
      Conserved Domains (3) summary
      smart00338
      Location:262 → 326
      BRLZ; basic region leucin zipper
      cd14702
      Location:267 → 317
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 95
      MFMR; G-box binding protein MFMR

    3. XM_006590300.4 → XP_006590363.1  G-box binding factor isoform X1

      UniProtKB/TrEMBL
      A0A0R0HQF0, Q43449
      Conserved Domains (3) summary
      smart00338
      Location:287 → 351
      BRLZ; basic region leucin zipper
      cd14702
      Location:292 → 342
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:26 → 120
      MFMR; G-box binding protein MFMR

    4. XM_014763526.3 → XP_014619012.1  G-box binding factor isoform X2

      UniProtKB/TrEMBL
      Q43449
      Conserved Domains (3) summary
      smart00338
      Location:272 → 336
      BRLZ; basic region leucin zipper
      cd14702
      Location:277 → 327
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:26 → 105
      MFMR; G-box binding protein MFMR

    5. XM_041006462.1 → XP_040862396.1  G-box binding factor isoform X3

      UniProtKB/TrEMBL
      I1LHN8, Q43449
      Conserved Domains (3) summary
      smart00338
      Location:262 → 326
      BRLZ; basic region leucin zipper
      cd14702
      Location:267 → 317
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 95
      MFMR; G-box binding protein MFMR
    Nucleotide Protein
    Heading Accession and Version

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