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    LOC542408 subtilisin-chymotrypsin inhibitor homolog 1 [ Zea mays ]

    Gene ID: 542408, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC542408
    Gene description
    subtilisin-chymotrypsin inhibitor homolog 1
    Locus tag
    ZEAMMB73_Zm00001d011080
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    MPI; sci1; GRMZM2G028393
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    Genomic context

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    See LOC542408 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (138037044..138037615)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (138416459..138417030)

    Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100279770 Neighboring gene uncharacterized LOC100278126 Neighboring gene uncharacterized LOC100381910 Neighboring gene transfer RNA alanine (anticodon UGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression of a maize proteinase inhibitor gene is induced in response to wounding and fungal infection: systemic wound-response of a monocot gene. Cordero MJ, et al. Plant J, 1994 Aug. PMID 7920708
    2. Molecular cloning and characterization of six cDNAs expressed during glucose starvation in excised maize (Zea mays L.) root tips. Chevalier C, et al. Plant Mol Biol, 1995 Jun. PMID 7632917
    3. Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Jia J, et al. Plant J, 2006 Dec. PMID 17076806
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-chymotrypsin inhibitor homolog 1
    Names
    CI-ms
    PCO087322
    PCO087322(631)
    Protease inhibitor
    maize protease inhibitor
    maize proteinase inhibitor
    pis7
    proteinase inhibitor
    serine proteinase inhbitor
    subtilisin-chymotrypsin inhibitor CI-1B
    subtilisin-chymotrypsin inhibitor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111979.1 → NP_001105449.1  subtilisin-chymotrypsin inhibitor homolog 1

      See identical proteins and their annotated locations for NP_001105449.1

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (1) is intronless.
      Source sequence(s)
      X78988
      UniProtKB/TrEMBL
      A0A3L6DR70, A0A8J8Y7K7, B6T013, B8QVS2, B8QVS8, B8QVT0, Q2XWZ0, Q2XX00, Q2XX03, Q42420
      Conserved Domains (1) summary
      pfam00280
      Location:14 → 73
      potato_inhibit; Potato inhibitor I family

    2. NM_001245885.2 → NP_001232814.2  subtilisin-chymotrypsin inhibitor homolog 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the intron.
      Source sequence(s)
      AY104061, BM337050, FL403761
      UniProtKB/TrEMBL
      A0A3L6DR70, A0A8J8Y7K7, Q2XX03, Q42420

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      138037044..138037615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001348690.1: Suppressed sequence

      Description
      NM_001348690.1: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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