U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC542367 GADPH (AA 1-337) [ Zea mays ]

    Gene ID: 542367, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC542367
    Gene description
    GADPH (AA 1-337)
    Locus tag
    ZEAMMB73_Zm00001d049641
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GAPC; GPC1; GAPC1; GAPDH; GRMZM2G046804
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC542367 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (38912654..38916331, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (38551602..38555126, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene transcription factor GTE9 Neighboring gene Lysine histidine transporter 2 Neighboring gene Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' Neighboring gene uncharacterized LOC103653115

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structure, evolution and anaerobic regulation of a nuclear gene encoding cytosolic glyceraldehyde-3-phosphate dehydrogenase from maize. Martinez P, et al. J Mol Biol, 1989 Aug 20. PMID 2810356
    2. Endosymbiotic origin and codon bias of the nuclear gene for chloroplast glyceraldehyde-3-phosphate dehydrogenase from maize. Brinkmann H, et al. J Mol Evol, 1987. PMID 3131533
    3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    4. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic
    Names
    Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1
    glyceraldehyde-3-phosphate dehydrogenase1
    NP_001105413.1
    XP_008677789.1
    XP_020407345.1
    XP_020407346.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111943.1 → NP_001105413.1  glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic

      See identical proteins and their annotated locations for NP_001105413.1

      Status: PROVISIONAL

      Source sequence(s)
      X07156
      UniProtKB/Swiss-Prot
      P08735
      UniProtKB/TrEMBL
      A0A3L6EXI8, B6SJZ8
      Conserved Domains (3) summary
      PLN02358
      Location:3 → 336
      PLN02358; glyceraldehyde-3-phosphate dehydrogenase
      pfam00044
      Location:4 → 154
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
      pfam02800
      Location:159 → 316
      Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      38912654..38916331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020551757.2 → XP_020407346.1  glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic isoform X2

      UniProtKB/Swiss-Prot
      P08735
      UniProtKB/TrEMBL
      A0A3L6EXI8, B6SJZ8, C4JBS8
      Conserved Domains (1) summary
      cl27764
      Location:2 → 333
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

    2. XM_020551756.2 → XP_020407345.1  glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic isoform X2

      UniProtKB/Swiss-Prot
      P08735
      UniProtKB/TrEMBL
      A0A3L6EXI8, B6SJZ8, C4JBS8
      Conserved Domains (1) summary
      cl27764
      Location:2 → 333
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

    3. XM_008679567.3 → XP_008677789.1  glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic isoform X1

      See identical proteins and their annotated locations for XP_008677789.1

      UniProtKB/Swiss-Prot
      P08735
      UniProtKB/TrEMBL
      A0A3L6EXI8, A0A804NNC7, B6SJZ8
      Conserved Domains (3) summary
      PLN02358
      Location:10 → 345
      PLN02358; glyceraldehyde-3-phosphate dehydrogenase
      pfam00044
      Location:14 → 164
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
      pfam02800
      Location:169 → 326
      Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P08735.2 GenPept UniProtKB/Swiss-Prot:P08735

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.