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    NOM1 nucleolar protein with MIF4G domain 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 482820, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NOM1provided by VGNC
    Official Full Name
    nucleolar protein with MIF4G domain 1provided by VGNC
    Primary source
    VGNC:VGNC:111597
    See related
    Ensembl:ENSCAFG00845013684
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See NOM1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (21205907..21221760)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (20107858..20123705)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (20209587..20225433)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (19574723..19590558)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (20156928..20172976)

    Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene limb development membrane protein 1 Neighboring gene vegetative cell wall protein gp1-like Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC102155878 Neighboring gene motor neuron and pancreas homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal small subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolar MIF4G domain-containing protein 1; LOW QUALITY PROTEIN: nucleolar MIF4G domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051820.1 Reference ROS_Cfam_1.0

      Range
      21205907..21221760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038689605.1 → XP_038545533.1  nucleolar MIF4G domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NQR2, A0A8I3NMW6
      Related
      ENSCAFP00845019172.1, ENSCAFT00845024390.1
      Conserved Domains (2) summary
      pfam02854
      Location:367 → 563
      MIF4G; MIF4G domain
      cl02653
      Location:659 → 765
      MA3; MA3 domain

    2. XM_038689606.1 → XP_038545534.1  nucleolar MIF4G domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0NQR2
      Conserved Domains (2) summary
      pfam02854
      Location:366 → 562
      MIF4G; MIF4G domain
      cl02653
      Location:658 → 764
      MA3; MA3 domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049276.1 Alternate UMICH_Zoey_3.1

      Range
      19574723..19590558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038497410.1 → XP_038353338.1  LOW QUALITY PROTEIN: nucleolar MIF4G domain-containing protein 1 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

      Range
      20156928..20172976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038623839.1 → XP_038479767.1  nucleolar MIF4G domain-containing protein 1 isoform X1

    2. XM_038623840.1 → XP_038479768.1  nucleolar MIF4G domain-containing protein 1 isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

      Range
      20209587..20225433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038559832.1 → XP_038415760.1  nucleolar MIF4G domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NQR2

    2. XM_038559833.1 → XP_038415761.1  nucleolar MIF4G domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0NQR2

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      20107858..20123705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038452586.1 → XP_038308514.1  nucleolar MIF4G domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0NQR2, A0A8P0SSZ0
      Conserved Domains (2) summary
      pfam02854
      Location:367 → 563
      MIF4G; MIF4G domain
      cl02653
      Location:659 → 765
      MA3; MA3 domain

    2. XM_038452587.1 → XP_038308515.1  nucleolar MIF4G domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0NQR2
      Conserved Domains (2) summary
      pfam02854
      Location:366 → 562
      MIF4G; MIF4G domain
      cl02653
      Location:658 → 764
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version

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