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    ZNF84 zinc finger protein 84 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 452393, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZNF84provided by VGNC
    Official Full Name
    zinc finger protein 84provided by VGNC
    Primary source
    VGNC:VGNC:5659
    Locus tag
    CK820_G0054936
    See related
    Ensembl:ENSPTRG00000022681
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human all
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    Genomic context

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    See ZNF84 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (139941150..139963610)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (138529576..138555739)

    Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 26 Neighboring gene U4atac minor spliceosomal RNA Neighboring gene uncharacterized LOC104001763 Neighboring gene protein tyrosine phosphatase type IVA 2-like Neighboring gene zinc finger protein 140 Neighboring gene zinc finger protein 891 Neighboring gene zinc finger protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 84
    Names
    zinc finger protein 84 (HPF2)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      139941150..139963610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009426625.4 → XP_009424900.1  zinc finger protein 84 isoform X1

      See identical proteins and their annotated locations for XP_009424900.1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7
      Related
      ENSPTRP00000009620.6
      Conserved Domains (4) summary
      smart00349
      Location:9 → 68
      KRAB; krueppel associated box
      COG5048
      Location:317 → 724
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:461 → 481
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:278 → 302
      zf-H2C2_2; Zinc-finger double domain

    2. XM_063785327.1 → XP_063641397.1  zinc finger protein 84 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7

    3. XM_509503.7 → XP_509503.2  zinc finger protein 84 isoform X1

      See identical proteins and their annotated locations for XP_509503.2

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7
      Conserved Domains (4) summary
      smart00349
      Location:9 → 68
      KRAB; krueppel associated box
      COG5048
      Location:317 → 724
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:461 → 481
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:278 → 302
      zf-H2C2_2; Zinc-finger double domain

    4. XM_063785330.1 → XP_063641400.1  zinc finger protein 84 isoform X2

    5. XM_009426626.4 → XP_009424901.1  zinc finger protein 84 isoform X1

      See identical proteins and their annotated locations for XP_009424901.1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7
      Conserved Domains (4) summary
      smart00349
      Location:9 → 68
      KRAB; krueppel associated box
      COG5048
      Location:317 → 724
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:461 → 481
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:278 → 302
      zf-H2C2_2; Zinc-finger double domain

    6. XM_054663868.2 → XP_054519843.1  zinc finger protein 84 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7

    7. XM_016924752.4 → XP_016780241.1  zinc finger protein 84 isoform X2

      Conserved Domains (5) summary
      smart00349
      Location:1 → 32
      KRAB; krueppel associated box
      COG5048
      Location:281 → 688
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:425 → 445
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:423 → 445
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:297 → 322
      zf-H2C2_2; Zinc-finger double domain

    8. XM_063785331.1 → XP_063641401.1  zinc finger protein 84 isoform X2

    9. XM_063785328.1 → XP_063641398.1  zinc finger protein 84 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7

    10. XM_063785332.1 → XP_063641402.1  zinc finger protein 84 isoform X2

    11. XM_063785329.1 → XP_063641399.1  zinc finger protein 84 isoform X1

      UniProtKB/TrEMBL
      A0A2I3SZ32, A0A2J8IMJ0, A0A6D2Y6Z7
    Nucleotide Protein
    Heading Accession and Version

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