sf3b4.L splicing factor 3b subunit 4 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sf3b4.L
Official Full Name: splicing factor 3b subunit 4 L homeolog
Primary source: Xenbase:XB-GENE-17335927
Locus tag: XELAEV_18040405mg
See related: EnsemblRapid:ENSXLAG00005028197
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: spx
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Genomic context

Location:: chromosome: 8L

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (119943287..119951122, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (105100447..105108266, complement)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U12-type spliceosomal complex	IEA Inferred from Electronic Annotation more info
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: splicing factor 3b subunit 4 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093325.1 → NP_001086794.1 splicing factor 3b subunit 4 L homeolog

See identical proteins and their annotated locations for NP_001086794.1

Status: PROVISIONAL

Source sequence(s)

BC077458

UniProtKB/TrEMBL

A0A974CAI0, Q6AZR0

Conserved Domains (2) summary

cd12334
Location:15 → 88

RRM1_SF3B4; RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins

cd12335
Location:99 → 181

RRM2_SF3B4; RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

119943287..119951122 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041572048.1 → XP_041427982.1 splicing factor 3b subunit 4 L homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1LEM3

Related

ENSXLAP00005083980.1, ENSXLAT00005085626.1

Conserved Domains (1) summary

TIGR01628
Location:3 → 150

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family