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    LOC4348130 vesicle-associated membrane protein 714 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348130, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348130
    Gene description
    vesicle-associated membrane protein 714
    Locus tag
    OSNPB_100154000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348130 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (3384801..3387289, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (3358028..3360551, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353703 Neighboring gene putative cyclin-dependent kinase F-2 Neighboring gene putative cyclin-dependent kinase F-2 Neighboring gene putative cyclin-dependent kinase F-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vesicle-associated membrane protein 714
    Names
    Os10g0154000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      3384801..3387289 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759500.3 → XP_015614986.1  vesicle-associated membrane protein 714

      UniProtKB/TrEMBL
      A0A8J8XKM5, B9G7J8, Q0IYW7, Q33B02, Q8S670
      Conserved Domains (2) summary
      cd14824
      Location:4 → 124
      Longin; longin domain
      pfam00957
      Location:129 → 217
      Synaptobrevin
    Nucleotide Protein
    Heading Accession and Version

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