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    LOC4344376 SNF2 domain-containing protein CLASSY 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344376, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344376
    Gene description
    SNF2 domain-containing protein CLASSY 1
    Locus tag
    OSNPB_070692500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 1.2), flowers (RPKM 0.4) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29703053..29709722)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29468644..29475499)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene CASP-like protein 4B1 Neighboring gene uncharacterized LOC9266851 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene eukaryotic translation initiation factor 2 subunit alpha homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SNF2 domain-containing protein CLASSY 1
    Names
    Os07g0692500
    Os07g0692600
    P0034A04.120
    P0034A04.121
    putative DNA repair protein rhp54

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29703053..29709722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790931.3 → XP_015646417.1  SNF2 domain-containing protein CLASSY 1

      UniProtKB/TrEMBL
      B9FV10
      Conserved Domains (2) summary
      cd18793
      Location:1132 → 1270
      SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
      cd18007
      Location:753 → 1015
      DEXHc_ATRX-like; DEXH-box helicase domain of ATRX-like proteins
    Nucleotide Protein
    Heading Accession and Version

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